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#
#coding:utf-8
#
#Author : QCSun
#Email : qcsun@sunhpc.com
#Times : 2023-04-14 05:21:02
#WebSite : https://www.sunhpc.com
import os
import sys
import sunhpc
import shutil
class command(sunhpc.commands.soft.command):
pass
class Command(command):
"""
Build the AutoDock software.
<arg type="string" name="version">
Specifies the software version. e.g,, version=4.2.6
</arg>
<param type="path" name="prefix">
Specifies the software install path.
Default: /share/apps/soft/autodock
</param>
<param type="path" name="envs">
Specifies the software env path.
Default: /share/apps/envs
</param>
<param type="path" name="source">
Specifies the software source path. e.g,, /mnt/usb
Default: /mnt/usb
</param>
<example cmd='soft autodock prefix=/share/apps/soft version=4.2.6'>
install the autodock software.
</example>
"""
def run(self, params, args):
(prefix, version, source, envs) = self.fillParams([
('prefix', '/share/apps/soft/autodock'),
('version', None),
('source', '/mnt/usb'),
('envs', '/share/apps/envs'),
])
if len(args):
version = args[0]
if not version:
self.msg('must supply an "AutoDock version" e.g,, version=4.2.6', 'a')
try:
os.makedirs(prefix)
self.msg("The %s directory does not exist,and it will be created." % prefix, 'w')
except FileExistsError:
pass
if not os.path.exists(envs):
os.makedirs(envs)
if version == '4.2.6':
basename = 'autodock-4.2.6'
else:
self.msg('Version error, Try use version number "4.2.6"', 'a')
filename = '%s.tar.bz2' % basename
softname = os.path.join(source, 'hpcsoft/AutoDock', filename)
if not os.path.exists(softname):
self.msg('The "%s" not found.' % softname, 'a')
destname = os.path.join(prefix, basename)
softlist = os.listdir(prefix)
if basename in softlist:
self.msg('The %s already exists,to reinstall it, remove it first.' % basename, 'w')
else:
self.msg('Start installing the %s software to the %s directory...' % (basename, prefix))
os.system('tar -xf %s -C %s' % (softname, prefix))
gsenv = os.path.join(envs, '%s-env.sh' % basename)
with open(gsenv, 'w') as f:
f.write('#!/bin/sh\n')
f.write('#\n# %s env config\n#\n\n' % basename)
f.write('export PATH=%s/%s:$PATH\n' % (prefix, basename))
# create shared user and group.
self.msg('')
self.msg('--------------------------------------------------------')
self.msg('Create a shared group to run the %s software.' % basename)
self.msg(' 1, groupadd -g 888 public ')
self.msg(' 2, usermod -G public dell ')
self.msg(' 3, chown -R root:public %s/%s' % (prefix, basename))
self.msg('--------------------------------------------------------')
self.msg('')
self.msg(' source %s' % gsenv)
self.msg('--------------------------------------------------------')
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