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#
#coding:utf-8
#
#Author : QCSun
#Email : qcsun@sunhpc.com
#Times : 2023-04-14 05:21:02
#WebSite : https://www.sunhpc.com
import os
import re
import sys
import sunhpc
import shutil
class command(sunhpc.commands.soft.command):
pass
class Command(command):
"""
Compilation and installation of the parallel computing software.
<arg type="string" name="version">
Specifies the software version. e.g,, version=x.x.x
</arg>
<param type="path" name="source">
Specifies the software source path. Default: /mnt/usb
</param>
<param type="path" name="prefix">
Specifies the software install path. Default: /share/apps/soft
</param>
<param type="path" name="envs">
Specifies the environment variable storage path. Default: /share/apps/envs
</param>
<example cmd='soft mpi prefix=/share/apps/soft/xxx version=x.x.x'>
Build the command line and associated parameters for this software.
</example>
"""
def run(self, params, args):
(prefix, source, envs, version) = self.fillParams([
('prefix', '/share/apps/soft'),
('source', '/mnt/usb'),
('envs', '/share/apps/envs'),
('version', None),
])
softname = 'autodock'
suffname = 'tar.gz'
dirsname = os.path.join(source, 'hpcsoft', 'AutoDock')
try:
verslist = self.getVersions(key=softname, suffix=suffname, dirs=dirsname)
except FileNotFoundError as e:
self.msg(str(e), 'a')
if len(args):
version = args[0]
if not version:
self.msg('must supply an "Version Number", e.g,, version=%s' % '/'.join(verslist), 'a')
self.create_dirs(prefix, source, envs, version, softname, suffname, dirsname)
self.build(prefix)
self.clean()
def build(self, prefix):
"""Start build the software."""
self.cwd = os.getcwd()
names = os.listdir(self.tmpdirs)
if self.basename not in names:
self.msg('Unpack the file from the %s to the %s directory.' % (self.filename, prefix))
os.system('tar -xf %s -C %s' % (self.source, prefix))
with open(self.envfile, 'w') as f:
f.write('#!/bin/sh\n')
f.write('#\n# %s env config\n#\n\n' % self.basename)
f.write('export PATH=%s:$PATH\n' % (self.prefix))
# create shared user and group.
self.msg('')
self.msg('--------------------------------------------------------')
self.msg('Create a shared group to run the %s software.' % self.basename)
self.msg(' 1, groupadd -g 888 public ')
self.msg(' 2, usermod -G public dell ')
self.msg(' 3, chown -R root:public %s' % self.prefix)
self.msg('--------------------------------------------------------')
self.msg('')
self.msg(' source %s' % self.envfile)
self.msg('--------------------------------------------------------')
def create_dirs(self, prefix, source, envs, version, softname, suffname, dirsname):
"""Create base build directory."""
self.basename = '%s-%s' % (softname, version)
self.filename = '%s.%s' % (self.basename, suffname)
self.prefix = os.path.join(prefix, softname, version)
if not os.path.exists(self.prefix):
os.makedirs(self.prefix)
self.source = os.path.join(dirsname, self.filename)
if not os.path.exists(self.source):
self.msg('The %s does not exist,please check it.' % self.source, 'a')
if not os.path.exists(envs):
os.makedirs(envs)
self.envfile = os.path.join(envs, '%s-%s' % (softname, version))
self.tmpdirs = os.path.join(prefix, 'tmpdirs', softname)
if not os.path.exists(self.tmpdirs):
os.makedirs(self.tmpdirs)
def clean(self):
"""Clean the install tmp directory."""
if os.path.exists(self.tmpdirs):
shutil.rmtree(self.tmpdirs)
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